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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46545066_46562679_F

Intron Information:

Intron Rank:
133441
Intron Class:
major
Intron Phase:
Intron Coordinates:
46545066 - 46562679
Intron Length:
17614

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGAATG
5'SS Class:
strong_major
3'SS Sequence:
TTGGGCTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTGTCAA
U12 Branch Point Sequence:
CTGCTGTCAATC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.5
0.81
0.9
77.2
37.7
Major BPS
63.3
0.33
1.2
67
39.8
Major PPT
68.3
0.41
0.9
59
43
Minor 5ss
43.2
-0.7
2.9
57.1
47.2
Minor BPS
43
-0.5
2.1
50.96
40.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000021782
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024012
46544507 - 46562759
18253