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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46605538_46676970_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46605538 - 46676970
Intron Length:
71433

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGGCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATGCAT
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
RKEMTVQDPADVTEIAPCIL
Intron Amino Acid Position:
100

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.1
0.9
0.9
72.3
39
Major BPS
67.2
0.43
1.4
77.7
37.1
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
31
-2.2
3.2
39.6
45.9
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
CRADD
Ensembl Gene ID:
ENSAPLG00000015058
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015681
46605242 - 46679408
74167