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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46677474_46678772_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
46677474 - 46678772
Intron Length:
1299

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGCACC
5'SS Class:
strong_major
3'SS Sequence:
TAATATTTCCCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTCTAAT
U12 Branch Point Sequence:
TTCTCTCTAATA
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
74.9
35.3
Major BPS
82.2
0.8
0.9
81.6
27
Major PPT
74.4
0.55
1
65.8
44.5
Minor 5ss
35.2
-1.7
2.8
43.7
43.7
Minor BPS
65.5
0.48
1.6
75.53
36.4

Associated Gene:

Gene:
CRADD
Ensembl Gene ID:
ENSAPLG00000015058
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015681
46605242 - 46679408
74167