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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46712524_46713750_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
46712524 - 46713750
Intron Length:
1227

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTAAT
5'SS Class:
major
3'SS Sequence:
CTCTTTCTTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CATTCAC
U12 Branch Point Sequence:
CGTGCATTCACT
Flanking Amino Acid:
TTKHRWYPVGQYHRRRKNPN
Intron Amino Acid Position:
131

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1
81.1
32.8
Major BPS
69.9
0.5
1
73
31.5
Major PPT
83.6
0.76
0.7
76.9
31.9
Minor 5ss
39.6
-1.2
2.9
57
41.2
Minor BPS
48.8
-0
2.2
69.56
46.9

Associated Gene:

Gene:
MRPL42
Ensembl Gene ID:
ENSAPLG00000015057
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015680
46712478 - 46718372
5895