Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46715938_46716974_R

Intron Information:

Intron Rank:

Intron Class:

major-like

Intron Phase:

Intron Coordinates:

46715938 - 46716974

Intron Length:

1037

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CTG|GTATCTTAA

5'SS Class:

weak_major

3'SS Sequence:

TTTATTTTTATAG|C

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TTTTTAT

U12 Branch Point Sequence:

ATATATTTAAGA

Flanking Amino Acid:

TYSILPEDYNCKVELALTSD

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

67.5

0.41

1.2

65.6

36.4

Major BPS

96.5

1.15

0.6

34.2

Major PPT

88.2

0.86

0.7

84.3

30.6

Minor 5ss

54.6

0.16

2.1

63.4

43.4

Minor BPS

56.6

0.2

1.8

67.54

38.7

Associated Gene:

Gene:

MRPL42

Ensembl Gene ID:

ENSAPLG00000015057

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000015680

46712478 - 46718372

5895