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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46742427_46743048_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46742427 - 46743048
Intron Length:
622

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGACGTAT
5'SS Class:
major
3'SS Sequence:
TTTTTCTTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
TTTTTCTTAAAC
Flanking Amino Acid:
KTNEAQAIETARAWTRLYAM
Intron Amino Acid Position:
144

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.9
0.56
1.1
71.7
36.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
96.1
1.04
0.5
91.7
19.5
Minor 5ss
38.5
-1.3
3.4
55
49.2
Minor BPS
81.7
0.97
1.2
87.41
28.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000014911
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015549
46737446 - 46743089
5644