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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46753445_46754338_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46753445 - 46754338
Intron Length:
894

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGATAT
5'SS Class:
strong_major
3'SS Sequence:
AACATTTAAGCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTAAA
U12 Branch Point Sequence:
TCTACTTTAACA
Flanking Amino Acid:
KLGRLLGIFENQDRKHRTYV
Intron Amino Acid Position:
58

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.8
82.9
24
Major BPS
73.8
0.59
0.9
74
26.8
Major PPT
60.8
0.24
1.1
55.9
42.7
Minor 5ss
34.2
-1.8
3.2
46.6
48.7
Minor BPS
77.1
0.85
1.2
79.82
36.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031124
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021086
46752026 - 46787386
35361