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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46872218_46914824_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46872218 - 46914824
Intron Length:
42607

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGACTTCT
5'SS Class:
major
3'SS Sequence:
CTTTCTCTTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTCAT
U12 Branch Point Sequence:
GACATTTCATCT
Flanking Amino Acid:
MVFSLPFFPKTPGRVGSQSS
Intron Amino Acid Position:
11

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.4
0.69
1.1
77.5
33.5
Major BPS
91.2
1.02
0.7
91.7
20.2
Major PPT
86.3
0.82
0.6
85.1
22.4
Minor 5ss
42.9
-0.8
2.8
59.5
45
Minor BPS
43.6
-0.4
1.7
54.29
41.3

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042770
46872188 - 46976010
103823
ENSAPLT00000015124
46872188 - 46976010
103823