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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46914918_46917867_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46914918 - 46917867
Intron Length:
2950

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTGTGC
5'SS Class:
major
3'SS Sequence:
ATACATTTCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTTAA
U12 Branch Point Sequence:
AGTTTCTTAAAG
Flanking Amino Acid:
VDVNNEGSSEGFICPLCMKV
Intron Amino Acid Position:
42

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
68.8
0.44
1.1
57.8
42.2
Major BPS
82.2
0.8
0.8
71.9
35.8
Major PPT
71.8
0.49
0.9
65
40.2
Minor 5ss
36.1
-1.6
3.4
50.8
45.8
Minor BPS
67.6
0.41
1.5
67.79
39.3

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042770
46872188 - 46976010
103823