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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46932844_46933691_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46932844 - 46933691
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTAATTGCT
5'SS Class:
major
3'SS Sequence:
CTGTTTTCTTAAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CATTTAT
U12 Branch Point Sequence:
TGCTGTATAATG
Flanking Amino Acid:
LEKLQGQRQQDSKSDGLTTS
Intron Amino Acid Position:
125

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1
74.5
33.9
Major BPS
76.3
0.65
1
67.3
39.3
Major PPT
74.7
0.56
1
79.3
33.1
Minor 5ss
37.1
-1.5
3.3
51
39.6
Minor BPS
46
-0.4
2
52.32
43

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823
ENSAPLT00000042770
46872188 - 46976010
103823