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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46934677_46934756_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46934677 - 46934756
Intron Length:
80

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
CCTTCTTAATTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAA
U12 Branch Point Sequence:
TCCTTCTTAATT
Flanking Amino Acid:
KAAQLATEIVDLKAKYDEEI
Intron Amino Acid Position:
174

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.9
0.82
0.9
83.1
30.9
Major BPS
83
0.82
0.8
83.9
25.3
Major PPT
69.8
0.45
0.9
70.7
33.8
Minor 5ss
31.5
-2.1
2.7
34
41.5
Minor BPS
77
0.93
1.1
82.74
39.5

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042770
46872188 - 46976010
103823
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823