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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46936867_46942166_F

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46936867 - 46942166
Intron Length:
5300

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTGTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTTAAA
U12 Branch Point Sequence:
TTTGCTTTAAAC
Flanking Amino Acid:
HLQAEQANSEATINQLRAEL
Intron Amino Acid Position:
267

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
75.2
32.9
Major BPS
78
0.7
0.9
79.6
29.1
Major PPT
85.3
0.79
0.9
84.6
36
Minor 5ss
35.1
-1.7
3.5
50.5
46.1
Minor BPS
71.6
0.66
1.5
79.33
36

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042770
46872188 - 46976010
103823
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823