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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46952926_46953156_F

Intron Information:

Intron Rank:
13
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46952926 - 46953156
Intron Length:
231

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACATAG
5'SS Class:
major
3'SS Sequence:
TGTGATTTTCTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTATAAT
U12 Branch Point Sequence:
GTTGCTATAATT
Flanking Amino Acid:
NTTSKLREAQNDLEQVLRQI
Intron Amino Acid Position:
509

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.1
0.64
1.1
68.6
39.1
Major BPS
75.5
0.63
1.1
76
34.4
Major PPT
74.7
0.56
0.9
66.1
45
Minor 5ss
42.8
-0.8
2.9
55.7
48.5
Minor BPS
59.4
0.37
1.7
77.32
39.6

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042770
46872188 - 46976010
103823
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823