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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46953361_46953902_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46953361 - 46953902
Intron Length:
542

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGAACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTCACTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAC
U12 Branch Point Sequence:
TTCTATTTACCT
Flanking Amino Acid:
QEKNHALQIQVTQLTEKLKN
Intron Amino Acid Position:
577

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
87.2
27
Major BPS
90.1
0.99
0.7
91.6
20.3
Major PPT
87.5
0.84
0.7
82.6
27.5
Minor 5ss
36.1
-1.6
3
50.2
45.8
Minor BPS
61.2
0.43
1.8
80.33
41.9

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823
ENSAPLT00000042770
46872188 - 46976010
103823