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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46954104_46955471_F

Intron Information:

Intron Rank:
15
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46954104 - 46955471
Intron Length:
1368

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATGGAA
5'SS Class:
major
3'SS Sequence:
ACTTGTCTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAGTGAA
U12 Branch Point Sequence:
TTTTAGTGAAGT
Flanking Amino Acid:
KEKVSQLDVQVKAKTELLLS
Intron Amino Acid Position:
644

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.7
0.7
1
71.2
34.2
Major BPS
64.3
0.35
1.2
55.4
42
Major PPT
81.1
0.7
0.9
77.4
36.3
Minor 5ss
28.6
-2.5
3.5
37.7
47.1
Minor BPS
47.4
-0.1
2.5
77.85
44.1

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042770
46872188 - 46976010
103823
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823