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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46956958_46957824_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46956958 - 46957824
Intron Length:
867

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTTTGTATT
5'SS Class:
major
3'SS Sequence:
TAATGTATCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTATTTTTCATT
Flanking Amino Acid:
KTEELEGQLKVTSVLKCLNA
Intron Amino Acid Position:
727

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.5
0.7
1.1
84.7
32.4
Major BPS
100
1.24
0.5
100
0
Major PPT
69.1
0.43
1
62
42.8
Minor 5ss
44.1
-0.6
2.5
60.5
43.9
Minor BPS
61.3
0.44
1.7
79.64
37.1

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023696
46917868 - 46976010
58143