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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46957897_46958755_F

Intron Information:

Intron Rank:
17
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46957897 - 46958755
Intron Length:
859

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTCTGTATT
5'SS Class:
major
3'SS Sequence:
TTTTCTATCTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTGAT
U12 Branch Point Sequence:
ATGGCTCTAACT
Flanking Amino Acid:
YAVCFPKIYEKLEADILDAK
Intron Amino Acid Position:
751

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.9
0.63
1.3
83.5
35.1
Major BPS
91.3
1.03
0.7
79.6
35.6
Major PPT
86.6
0.82
0.7
85.5
27.3
Minor 5ss
43.2
-0.7
2.6
60.2
44.3
Minor BPS
57.2
0.3
1.8
74.7
42.3

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023696
46917868 - 46976010
58143