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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46961138_46962525_F

Intron Information:

Intron Rank:
20
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46961138 - 46962525
Intron Length:
1388

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGCTGT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGAATATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAT
U12 Branch Point Sequence:
TATTTTTGAATA
Flanking Amino Acid:
LKNSLEKKEGISKQLSIELD
Intron Amino Acid Position:
925

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
80.1
0.71
1
69.7
43.7
Major BPS
90.7
1.01
0.7
90
19.9
Major PPT
75.4
0.57
0.9
70.7
39
Minor 5ss
45.1
-0.5
2.9
56.3
47.9
Minor BPS
65.4
0.48
1.3
72.78
32.9

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015124
46872188 - 46976010
103823
ENSAPLT00000042770
46872188 - 46976010
103823
ENSAPLT00000023696
46917868 - 46976010
58143