About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46963705_46969957_F

Intron Information:

Intron Rank:
22
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46963705 - 46969957
Intron Length:
6253

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTACTTAGA
5'SS Class:
major
3'SS Sequence:
TCTTTGTAATTAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATTTAT
U12 Branch Point Sequence:
GTCTTTGTAATT
Flanking Amino Acid:
ELLATRQDLKSTEEKLALAQ
Intron Amino Acid Position:
1051

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.3
0.62
1.1
71
40.8
Major BPS
79.9
0.74
0.9
69.7
37.1
Major PPT
70.3
0.46
1
71.1
38.8
Minor 5ss
34.1
-1.8
2.9
43.4
43.5
Minor BPS
52.3
0.15
2
71.21
40.9

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042770
46872188 - 46976010
103823
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823