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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46970144_46970618_F

Intron Information:

Intron Rank:
23
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46970144 - 46970618
Intron Length:
475

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTAAATGTC
5'SS Class:
major
3'SS Sequence:
TTTTTTGTTCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATATAT
U12 Branch Point Sequence:
ATATCTGTATAT
Flanking Amino Acid:
KMLQDLQNDRILKEKDLANE
Intron Amino Acid Position:
1113

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.9
0.66
1
73
36.9
Major BPS
71.4
0.53
1
67.3
39.3
Major PPT
79.8
0.67
1
79.2
38.4
Minor 5ss
36.2
-1.6
3.4
43.7
44.2
Minor BPS
46.2
-0.2
2.2
68.3
42.5

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823
ENSAPLT00000042770
46872188 - 46976010
103823