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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46970751_46972207_F

Intron Information:

Intron Rank:
24
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
46970751 - 46972207
Intron Length:
1457

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATATTGA
5'SS Class:
major
3'SS Sequence:
TGTATCCTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
CTTTAAC
U12 Branch Point Sequence:
GCCACTTTAACT
Flanking Amino Acid:
LRVCKQEYEKEVSNLKDAKQ
Intron Amino Acid Position:
1157

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
70
36.8
Major BPS
77.3
0.68
1
79.3
29.4
Major PPT
72.2
0.5
1
66.6
39.4
Minor 5ss
45
-0.5
2.6
58.5
46
Minor BPS
66.9
0.61
1.4
73.03
44

Associated Gene:

Gene:
EEA1
Ensembl Gene ID:
ENSAPLG00000014455
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023696
46917868 - 46976010
58143
ENSAPLT00000015124
46872188 - 46976010
103823
ENSAPLT00000042770
46872188 - 46976010
103823