Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46972937_46974365_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

46972937 - 46974365

Intron Length:

1429

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTGAGCAGT

5'SS Class:

strong_major

3'SS Sequence:

TCTTTATCCTCAG|G

3'SS Class:

strong_PPT

U2 Branch Point Sequence:

TCTTTAT

U12 Branch Point Sequence:

CACTCTTTATCC

Flanking Amino Acid:

NQDERRALLERCIKSEGEIE

Intron Amino Acid Position:

1298

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

86.2

0.85

0.9

77.8

38.7

Major BPS

83.9

0.84

73.9

41.3

Major PPT

83.1

0.74

0.7

81.4

29.3

Minor 5ss

35.7

-1.6

48.8

Minor BPS

58.3

0.24

1.6

62.78

43.1

Associated Gene:

Gene:

EEA1

Ensembl Gene ID:

ENSAPLG00000014455

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000023696

46917868 - 46976010

58143

ENSAPLT00000015124

46872188 - 46976010

103823

ENSAPLT00000042770

46872188 - 46976010

103823