About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_46988952_46991840_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
46988952 - 46991840
Intron Length:
2889

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGTGCC
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATATAAT
U12 Branch Point Sequence:
ATTTATATAATT
Flanking Amino Acid:
LKNVDPIHVTVFSLRNAFLI
Intron Amino Acid Position:
312

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
75
33.4
Major BPS
79
0.72
1
78.4
31.2
Major PPT
100
1.12
0.4
100
0
Minor 5ss
40
-1.1
3
53.2
44.1
Minor BPS
59.5
0.38
1.7
80.35
35.2

Associated Gene:

Gene:
PLEKHG7
Ensembl Gene ID:
ENSAPLG00000014424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015022
46985548 - 47007412
21865
ENSAPLT00000041333
46985548 - 47005512
19965