About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47004901_47005422_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
47004901 - 47005422
Intron Length:
522

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATCAAAA
5'SS Class:
major
3'SS Sequence:
CCTCAATCAATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCCTCAA
U12 Branch Point Sequence:
TCTTCCTCAATC
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.2
0.5
1.2
69.6
36.5
Major BPS
73.1
0.58
1
73.8
32.3
Major PPT
60.7
0.24
0.9
55.1
33.8
Minor 5ss
44.4
-0.6
2.7
57.4
46.9
Minor BPS
73.1
0.7
1.5
78.52
37.5

Associated Gene:

Gene:
PLEKHG7
Ensembl Gene ID:
ENSAPLG00000014424
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000015022
46985548 - 47007412
21865