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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47041262_47041624_R

Intron Information:

Intron Rank:
135951
Intron Class:
major
Intron Phase:
Intron Coordinates:
47041262 - 47041624
Intron Length:
363

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAATTATT
5'SS Class:
strong_major
3'SS Sequence:
TATTTATTTATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
ATTTATTTATTT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.8
0.75
1
85.5
30.7
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
82.7
0.74
0.8
77.6
35.4
Minor 5ss
41.9
-0.9
2.9
57.4
41.1
Minor BPS
59.9
0.39
1.7
79.07
37.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000020573
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047833
47040261 - 47044069
3809