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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47097694_47104477_R

Intron Information:

Intron Rank:
141044
Intron Class:
major
Intron Phase:
Intron Coordinates:
47097694 - 47104477
Intron Length:
6784

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GGG|GTAAGTAAT
5'SS Class:
strong_major
3'SS Sequence:
TTTTCTTCCCAAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AAATCAT
U12 Branch Point Sequence:
TACACATTTATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.2
0.92
0.9
87
30
Major BPS
71.6
0.54
1
72
33.1
Major PPT
76
0.59
1
75.7
33.1
Minor 5ss
37
-1.5
2.8
43.1
43.9
Minor BPS
48.5
-0
1.9
66.99
43.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039923
47097128 - 47113759
16632