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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47104608_47113019_R

Intron Information:

Intron Rank:
141045
Intron Class:
major
Intron Phase:
Intron Coordinates:
47104608 - 47113019
Intron Length:
8412

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAATTCTC
5'SS Class:
strong_major
3'SS Sequence:
TCTTTGATTTCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTCTTTGATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
0.9
78.1
36.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.1
0.77
0.8
81.4
34.9
Minor 5ss
38.8
-1.3
3
53.4
43.7
Minor BPS
83.7
1.14
0.9
94.68
25

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023209
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000039923
47097128 - 47113759
16632