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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47111435_47166160_F

Intron Information:

Intron Rank:
144385
Intron Class:
major
Intron Phase:
Intron Coordinates:
47111435 - 47166160
Intron Length:
54726

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCC|GTGAGTATT
5'SS Class:
major
3'SS Sequence:
ATCTGTTCTCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
CTTATTTTATCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
69.6
0.46
1.3
78.2
37.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
74.6
0.55
0.9
66.3
40.2
Minor 5ss
38.1
-1.3
3
56
41.5
Minor BPS
58.8
0.36
1.6
75.61
41.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030164
47111228 - 47177147
65920