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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4712854_4712956_R

Intron Information:

Intron Rank:
142763
Intron Class:
major
Intron Phase:
Intron Coordinates:
4712854 - 4712956
Intron Length:
103

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGAGC
5'SS Class:
major
3'SS Sequence:
ATTATCCTTACAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
TTATCCTTACAG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.2
0.48
1.1
61.3
40.2
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
80.9
0.7
0.9
73.6
36.3
Minor 5ss
30.6
-2.2
3.4
42.5
44.6
Minor BPS
63.1
0.27
1.8
69.74
43.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024094
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027717
4710052 - 4713973
3922