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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47137789_47137930_R

Intron Information:

Intron Rank:
155550
Intron Class:
major
Intron Phase:
Intron Coordinates:
47137789 - 47137930
Intron Length:
142

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGTGGG
5'SS Class:
strong_major
3'SS Sequence:
TTTTGCCAATTAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTGCCAA
U12 Branch Point Sequence:
GTTTTGCCAATT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89
0.92
0.8
72.2
39.5
Major BPS
53
0.07
1.4
64.5
42.8
Major PPT
68.7
0.42
1
68.6
37.6
Minor 5ss
26.6
-2.7
3
31.5
42.8
Minor BPS
44.2
-0.3
2.4
69.24
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000031187
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030143
47132470 - 47137963
5494