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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47160017_47162510_F

Intron Information:

Intron Rank:
144383
Intron Class:
major
Intron Phase:
Intron Coordinates:
47160017 - 47162510
Intron Length:
2494

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTCAGCAGC
5'SS Class:
major
3'SS Sequence:
TCTTGTTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TCTTGTTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
74.1
0.57
1.3
67.1
44.6
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
84.5
0.78
0.7
79.8
32.3
Minor 5ss
35.1
-1.7
2.8
44
43.4
Minor BPS
50.2
0
2
66.16
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027824
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000021635
47159829 - 47167298
7470