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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47211513_47212446_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47211513 - 47212446
Intron Length:
934

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTGAGGGAG
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTTGTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTTTTTTATTT
Flanking Amino Acid:
FSQSLQELLAEHYKHHWFPE
Intron Amino Acid Position:
221

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
69.1
37.5
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
88.7
0.87
0.7
85.2
29.2
Minor 5ss
23.1
-3.1
3.2
27.7
44.2
Minor BPS
70.5
0.72
1.5
86.8
33.5

Associated Gene:

Gene:
BTG1
Ensembl Gene ID:
ENSAPLG00000020200
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019025
47210852 - 47213730
2879