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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4727346_4728745_R

Intron Information:

Intron Rank:
149098
Intron Class:
major
Intron Phase:
Intron Coordinates:
4727346 - 4728745
Intron Length:
1400

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAGAGTAC
5'SS Class:
major
3'SS Sequence:
CCATTCTCTCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCTTAAT
U12 Branch Point Sequence:
CTCTTTCTACCA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71
0.49
1.1
63.3
37.9
Major BPS
69.2
0.48
1.3
71.9
41
Major PPT
78
0.63
0.8
69.3
36.7
Minor 5ss
35
-1.7
3.6
48.7
47.8
Minor BPS
46.7
-0.2
1.9
58.44
42.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043569
4727122 - 4859812
132691