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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47480664_47481033_R

Intron Information:

Intron Rank:
143470
Intron Class:
major
Intron Phase:
Intron Coordinates:
47480664 - 47481033
Intron Length:
370

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGCACT
5'SS Class:
strong_major
3'SS Sequence:
TTTGTTTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AACAAAA
U12 Branch Point Sequence:
TTTGTTTTTACA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.6
0.75
1
75.3
40.8
Major BPS
51.5
0.04
0.9
57.3
24.9
Major PPT
92.3
0.95
0.7
87.5
30
Minor 5ss
41.6
-0.9
2.9
51
45.2
Minor BPS
60.3
0.32
1.7
74.12
37.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000024508
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000027698
47473381 - 47481172
7792