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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47574116_47574866_R

Intron Information:

Intron Rank:
153803
Intron Class:
major
Intron Phase:
Intron Coordinates:
47574116 - 47574866
Intron Length:
751

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGAGAATA
5'SS Class:
strong_major
3'SS Sequence:
GGACCTTTCATAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGCTCAT
U12 Branch Point Sequence:
ATTTTGTGGACC
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.8
0.94
0.7
85.9
23.8
Major BPS
79.7
0.74
1
79.6
35.6
Major PPT
63.6
0.31
0.9
57
38.5
Minor 5ss
31.6
-2.1
3
39.7
45.8
Minor BPS
48.9
-0.1
2.2
68.12
37.5

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000030243
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000047687
47572650 - 47574949
2300