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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47595569_47605057_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47595569 - 47605057
Intron Length:
9489

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTGTA
5'SS Class:
strong_major
3'SS Sequence:
TATTATTCCACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTATTAT
U12 Branch Point Sequence:
GTCTCCTTCATT
Flanking Amino Acid:
GDFKNLKNLHALILVNNKIS
Intron Amino Acid Position:
107

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.5
0.84
1
83.5
27.8
Major BPS
84.7
0.86
1
74.3
40.7
Major PPT
78.9
0.65
0.9
73
36.7
Minor 5ss
38.7
-1.3
3.4
53.7
43.8
Minor BPS
67
0.62
1.8
80.32
42.1

Associated Gene:

Gene:
DCN
Ensembl Gene ID:
ENSAPLG00000013984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038223
47581030 - 47618330
37301
ENSAPLT00000014597
47576720 - 47612758
36039