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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47611518_47612563_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
47611518 - 47612563
Intron Length:
1046

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTATGGTTT
5'SS Class:
strong_major
3'SS Sequence:
CAATACTTTTCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTCAA
U12 Branch Point Sequence:
TATTTCTCACTT
Flanking Amino Acid:
SGLGEHKYIQVVYLHNNKIA
Intron Amino Acid Position:
294

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
81.2
33.3
Major BPS
82
0.79
0.8
83.7
25.7
Major PPT
74.1
0.54
0.9
69.8
40.7
Minor 5ss
48.8
-0.1
3.1
72.7
44.5
Minor BPS
56.9
0.29
1.8
76.85
40.1

Associated Gene:

Gene:
DCN
Ensembl Gene ID:
ENSAPLG00000013984
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000038223
47581030 - 47618330
37301
ENSAPLT00000014597
47576720 - 47612758
36039