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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4763272_4859703_R

Intron Information:

Intron Rank:
149101
Intron Class:
major
Intron Phase:
Intron Coordinates:
4763272 - 4859703
Intron Length:
96432

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTAAGAAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTTTCCTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCTT
U12 Branch Point Sequence:
TTTTTCTTTCCT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.9
1.01
0.7
86
23.7
Major BPS
39.5
-0.6
4.3
85.7
34.9
Major PPT
88.9
0.88
0.6
88.5
21
Minor 5ss
32.8
-2
2.9
39.7
45.8
Minor BPS
47.9
-0
3.6
87.49
38.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000027713
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000043569
4727122 - 4859812
132691