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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47641769_47644416_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47641769 - 47644416
Intron Length:
2648

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
TCTCTCTCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTCTCCTGACTT
Flanking Amino Acid:
NFYLQVNKINNISYLNIVKT
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.4
31.3
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
82.7
0.73
0.7
81.3
23.7
Minor 5ss
36.3
-1.6
2.9
45.6
43.6
Minor BPS
62.5
0.47
1.8
80.5
41.8

Associated Gene:

Gene:
LUM
Ensembl Gene ID:
ENSAPLG00000013979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014557
47637296 - 47647132
9837