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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47641769_47647120_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
47641769 - 47647120
Intron Length:
5352

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTGAGTTAA
5'SS Class:
major
3'SS Sequence:
CCCTTTGTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATTAT
U12 Branch Point Sequence:
TTTCTCTTACTC
Flanking Amino Acid:
NFYLQVNKINKFPLSSFCKV
Intron Amino Acid Position:
293

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.3
0.55
1
70.4
31.3
Major BPS
76.9
0.67
1
66.3
40.4
Major PPT
81.5
0.71
0.8
79.3
32.7
Minor 5ss
36.3
-1.6
2.9
45.6
43.6
Minor BPS
64.7
0.44
1.6
75.09
35.7

Associated Gene:

Gene:
LUM
Ensembl Gene ID:
ENSAPLG00000013979
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000035776
47637296 - 47647275
9980