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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47660339_47660455_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
5UTR
Intron Coordinates:
47660339 - 47660455
Intron Length:
117

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCCCA
5'SS Class:
strong_major
3'SS Sequence:
TATTAATTCTTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTAAT
U12 Branch Point Sequence:
ATGCTATTAATT
Flanking Amino Acid:
5UTR
Intron Amino Acid Position:
5UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.6
0.89
0.9
71.6
40.2
Major BPS
91.8
1.04
0.7
90.2
19.3
Major PPT
73.2
0.52
0.9
70.8
39.4
Minor 5ss
38.2
-1.3
3
48.7
47
Minor BPS
58.1
0.33
1.6
72.68
38.3

Associated Gene:

Gene:
KERA
Ensembl Gene ID:
ENSAPLG00000013949
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000014525
47660225 - 47666848
6624