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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_47775311_47775913_R

Intron Information:

Intron Rank:
133041
Intron Class:
major
Intron Phase:
Intron Coordinates:
47775311 - 47775913
Intron Length:
603

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
TTTTTTTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAGTAAT
U12 Branch Point Sequence:
TTGTACAAAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.8
0.66
1
75.5
34.3
Major BPS
67.8
0.44
1.1
67.7
36.5
Major PPT
95.8
1.03
0.5
96.6
11.7
Minor 5ss
36.5
-1.5
3.4
54.7
43.6
Minor BPS
46.6
-0.1
2.2
71.38
44.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000018814
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037308
47774655 - 47776467
1813