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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_4816675_4817112_R

Intron Information:

Intron Rank:
130234
Intron Class:
major
Intron Phase:
Intron Coordinates:
4816675 - 4817112
Intron Length:
438

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAT|GTAAGTCAG
5'SS Class:
strong_major
3'SS Sequence:
TCTGGAAATTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGGAAAT
U12 Branch Point Sequence:
TTTTCTGGAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
70.9
40.9
Major BPS
52
0.05
1.3
59
44.6
Major PPT
64.7
0.33
1.1
60
44.3
Minor 5ss
36
-1.6
3
45.9
42.4
Minor BPS
53.7
0.19
2.2
82.05
39.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017274
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000025792
4815663 - 4819777
4115