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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48227543_48228407_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48227543 - 48228407
Intron Length:
865

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAT|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTGTTTTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTTAAAT
U12 Branch Point Sequence:
ATCTCTAAAACT
Flanking Amino Acid:
FYQPPGGNEALCGSVNVGEE
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.9
0.85
0.9
85.3
25.4
Major BPS
70
0.5
1.1
76.9
32.8
Major PPT
88.8
0.87
0.7
84.3
30.8
Minor 5ss
37.5
-1.4
2.8
46.9
41.8
Minor BPS
53.3
0.18
1.9
74.84
42.2

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010375
48222338 - 48254451
32114