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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48229374_48232258_F

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48229374 - 48232258
Intron Length:
2885

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAGGCATA
5'SS Class:
major
3'SS Sequence:
CCCTCTTTGACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTAAA
U12 Branch Point Sequence:
CCCTCTTTGACA
Flanking Amino Acid:
EKEKEKKDKKSKKQDGAVEN
Intron Amino Acid Position:
310

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.1
0.52
1.1
71.7
40.1
Major BPS
81.6
0.78
0.8
82
24.9
Major PPT
74.2
0.55
0.9
70.7
33.5
Minor 5ss
43.3
-0.7
3.2
56.9
42.1
Minor BPS
65.8
0.49
1.3
65.36
41.9

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010375
48222338 - 48254451
32114