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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48232298_48232669_F

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
48232298 - 48232669
Intron Length:
372

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATGCA
5'SS Class:
strong_major
3'SS Sequence:
TTCTAACTTCAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TTGCTTCTAACT
Flanking Amino Acid:
QDGAVENRNKAKAQDGAAME
Intron Amino Acid Position:
323

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.1
0.85
0.9
77.4
30.7
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
68.2
0.41
1.1
64.9
40.4
Minor 5ss
32.3
-2
3.2
41.6
45
Minor BPS
58.9
0.36
1.7
77.52
39

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010375
48222338 - 48254451
32114