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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48237870_48240652_F

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
48237870 - 48240652
Intron Length:
2783

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGAACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCCTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATCTGAT
U12 Branch Point Sequence:
ACTACTTAAACT
Flanking Amino Acid:
SKGASEIVLKKCFKILSANG
Intron Amino Acid Position:
597

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.75
0.9
77.2
31
Major BPS
82.5
0.81
0.8
71.4
36.6
Major PPT
90.3
0.91
0.6
88.3
21.3
Minor 5ss
35.5
-1.6
2.9
42.3
38.1
Minor BPS
59.9
0.39
1.7
74.63
42.4

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042280
48222338 - 48254451
32114
ENSAPLT00000010375
48222338 - 48254451
32114