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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48240891_48241801_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48240891 - 48241801
Intron Length:
911

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAGGATCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTCATATAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTTTTTCATA
Flanking Amino Acid:
VGIEDPVRPEVPDAIKKCQR
Intron Amino Acid Position:
677

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.5
0.74
1
71.4
35.1
Major BPS
100
1.24
0.5
100
0
Major PPT
84.8
0.78
0.8
81.6
29.4
Minor 5ss
36.8
-1.5
3.3
48.1
47.6
Minor BPS
64.7
0.46
1.7
78
33.3

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042280
48222338 - 48254451
32114
ENSAPLT00000010375
48222338 - 48254451
32114