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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48241982_48242249_F

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
48241982 - 48242249
Intron Length:
268

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTAAGCACA
5'SS Class:
strong_major
3'SS Sequence:
ATTCATTTGCCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTCAT
U12 Branch Point Sequence:
TGTATATTCATT
Flanking Amino Acid:
NRRIRNEKGELIYFLSKGGS
Intron Amino Acid Position:
720

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.3
0.95
0.8
80.7
33.8
Major BPS
92.2
1.05
0.7
91.9
19.6
Major PPT
72.6
0.51
1
65.9
44.5
Minor 5ss
39.7
-1.2
2.8
49.8
46.2
Minor BPS
47.8
-0
2
70.19
40.9

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000042280
48222338 - 48254451
32114