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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_1_48241986_48242409_F

Intron Information:

Intron Rank:
12
Intron Class:
major-like
Intron Phase:
1
Intron Coordinates:
48241986 - 48242409
Intron Length:
424

Sequence Information:

Terminal Dinucleotides:
GC-AG
5'SS Sequence:
TAA|GCACAATAA
5'SS Class:
weak_major
3'SS Sequence:
CATTTTATTTTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTTTAT
U12 Branch Point Sequence:
TAACACTGAAAT
Flanking Amino Acid:
RRIRNEKGEVSIIDSTVFDQ
Intron Amino Acid Position:
738

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
58.4
0.2
1.3
52.1
35.6
Major BPS
87.7
0.94
0.8
77.7
36.7
Major PPT
80.1
0.68
0.8
78.3
34.4
Minor 5ss
26.9
-2.6
4.2
37
42.1
Minor BPS
49.3
0.03
1.7
67.95
41.2

Associated Gene:

Gene:
ATP2B1
Ensembl Gene ID:
ENSAPLG00000009887
Chromosome:
1

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000010375
48222338 - 48254451
32114